--- title: "Reprex do's and don'ts" output: rmarkdown::html_vignette vignette: > %\VignetteIndexEntry{Reprex do's and don'ts} %\VignetteEngine{knitr::rmarkdown} %\VignetteEncoding{UTF-8} --- If you're asking for R help, reporting a bug, or requesting a new feature, you're more likely to succeed if you include a good reprex. ## Main requirements **Use the smallest, simplest, most [built-in data](https://stat.ethz.ch/R-manual/R-patched/library/datasets/html/00Index.html) possible.** - Think: `iris` or `mtcars`. Bore me. - If you must make some objects, minimize their size and complexity. - Many of the functions and packages you already use offer a way to create a small data frame "inline": - `read.table()` and friends have a `text` argument. Example: ```{r eval = FALSE} read.csv(text = "a,b\n1,2\n3,4") #> a b #> 1 1 2 #> 2 3 4 ``` - `tibble::tribble()` lets you use a natural and readable layout. Example: ```{r eval = FALSE} tibble::tribble( ~ a, ~ b, 1, 2, 3, 4 ) #> # A tibble: 2 x 2 #> a b #> #> 1 1 2 #> 2 3 4 ``` - Get just a bit of something with `head()` or by indexing with the result of `sample()`. If anything is random, consider using `set.seed()` to make it repeatable. - The [datapasta package](https://milesmcbain.github.io/datapasta/) can generate code for `data.frame()`, `tibble::tribble()`, or `data.table::data.table()` based on an existing R data frame. For example, a call to `tribble_format(head(ChickWeight, 3))` leaves this on the clipboard, ready to paste into your reprex: ```{r eval = FALSE} tibble::tribble( ~weight, ~Time, ~Chick, ~Diet, 42, 0, "1", "1", 51, 2, "1", "1", 59, 4, "1", "1" ) ``` - `dput()` is a decent last resort, i.e. if you simply cannot make do with built-in or simulated data or inline data creation in a more readable format. But `dput()` output is not very human-readable. Avoid if at all possible. - Look at official examples and try to write in that style. Consider adapting one. **Include commands on a strict "need to run" basis.** - Ruthlessly strip out anything unrelated to the specific matter at hand. - Include every single command that is required, e.g. loading specific packages via `library(foo)`. **Consider including so-called "session info"**, i.e. your OS and versions of R and add-on packages, if it's conceivable that it matters. - Use `reprex(..., session_info = TRUE)` for this. **Whitespace rationing is not in effect.** - Use good [coding style](https://style.tidyverse.org). - Use `reprex(..., style = TRUE)` to request automated styling of your code. **Pack it in, pack it out, and don't take liberties with other people's computers.** You are asking people to run this code! - Don't start with `rm(list = ls())`. It is anti-social to clobber other people's workspaces. - Don't start with `setwd("C:\Users\jenny\path\that\only\I\have")`, because it won't work on anyone else's computer. - Don't mask built-in functions, i.e. don't define a new function named `c` or `mean`. - If you change options, store original values at the start, do your thing, then restore them: ```{r eval = FALSE} opar <- par(pch = 19) par(opar) ``` - If you create files, delete them when you're done: ```{r eval = FALSE} write(x, "foo.txt") file.remove("foo.txt") ``` - Don't delete files or objects that you didn't create in the first place. - Take advantage of R's built-in ability to create temporary files and directories. Read up on [`tempfile()` and `tempdir()`](https://stat.ethz.ch/R-manual/R-patched/library/base/html/tempfile.html). ## This seems like a lot of work! Yes, creating a great reprex requires work. You are asking other people to do work too. It's a partnership. 80% of the time you will solve your own problem in the course of writing an excellent reprex. YMMV. The remaining 20% of the time, you will create a reprex that is more likely to elicit the desired behavior in others. ## Further reading: [How to make a great R reproducible example?](https://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example/16532098) thread on StackOverflow ## Package philosophy The reprex code: * Must run and, therefore, should be run **by the person posting**. No faking it. * Should be easy for others to digest, so **they don't necessarily have to run it**. You are encouraged to include selected bits of output. :scream: * Should be easy for others to copy + paste + run, **if and only if they so choose**. Don't let inclusion of output break executability. Accomplished like so: * Use `rmarkdown::render()` to run the code and capture output that you would normally see on your screen. This is done in a separate R process, via [callr](https://callr.r-lib.org), to guarantee it is self-contained. * Use chunk option `comment = "#>"` to include the output while retaining executability.